STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2385PFAM: cobalamin B12-binding domain protein; KEGG: stp:Strop_2266 cobalamin B12-binding domain protein. (254 aa)    
Predicted Functional Partners:
Sare_2384
PFAM: D-Lysine 56-aminomutase alpha subunit; KEGG: stp:Strop_2265 hypothetical protein.
 
  0.999
Sare_2382
KEGG: stp:Strop_2263 hypothetical protein.
 
  
 0.994
Sare_2381
Lysine 2,3-aminomutase; PFAM: Radical SAM domain protein; KEGG: stp:Strop_2262 radical SAM domain protein.
 
  
  0.986
Sare_2386
KEGG: stp:Strop_2267 hypothetical protein.
 
     0.949
Sare_2387
KEGG: stp:Strop_2268 hypothetical protein.
 
   
 0.943
Sare_2952
PFAM: methylaspartate mutase E subunit; KEGG: hal:VNG2288G MamB.
   
   0.800
Sare_0377
PFAM: protein of unknown function DUF849; KEGG: stp:Strop_0314 protein of unknown function DUF849.
  
     0.773
Sare_2383
PFAM: Amidohydrolase 3; KEGG: stp:Strop_2264 amidohydrolase 3.
       0.773
Sare_0776
KEGG: stp:Strop_0832 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
  
 
 0.627
Sare_3989
KEGG: stp:Strop_3608 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase.
  
 
 0.627
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.