Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sare_2425PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: stp:Strop_2026 helix-turn-helix, type 11 domain protein. (245 aa)    
Predicted Functional Partners:
Sare_2426
Hypothetical protein.
       0.773
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.754
Sare_2423
KEGG: sil:SPO2691 hypothetical protein.
 
     0.743
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.733
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.717
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.702
Sare_2368
KEGG: stp:Strop_2250 hypothetical protein.
 
   
 0.652
Sare_2424
KEGG: stp:Strop_2025 hypothetical protein.
       0.560
Sare_4810
PFAM: regulatory protein MerR; transcription activator effector binding; KEGG: stp:Strop_3506 transcription activator, effector binding.
 
     0.515
Sare_2367
KEGG: stp:Strop_2249 hypothetical protein.
 
   
 0.400
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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