STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2490PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sma:SAV5337 putative IolE protein. (303 aa)    
Predicted Functional Partners:
Sare_2488
Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: stp:Strop_2344 oxidoreductase domain protein.
 
 
 0.994
Sare_1242
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3439 NADH-dependent dyhydrogenase.
 
  
 0.795
Sare_2489
PFAM: 3-dehydroquinate synthase; KEGG: stp:Strop_2345 3-dehydroquinate synthase.
     
 0.787
Sare_2491
PFAM: luciferase family protein; KEGG: stp:Strop_2346 luciferase family protein.
  
    0.776
Sare_4046
PFAM: oxidoreductase domain protein; KEGG: stp:Strop_3670 oxidoreductase domain protein.
 
  
 0.713
Sare_1243
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3438 NADH-dependent dyhydrogenase.
 
  
 0.675
Sare_1266
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: stp:Strop_2218 oxidoreductase domain protein.
 
  
 0.672
Sare_1256
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: fra:Francci3_0430 oxidoreductase-like.
 
  
 0.617
Sare_0327
PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: sma:SAV5916 oxidoreductase.
 
  
 0.615
Sare_1684
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: stp:Strop_1689 oxidoreductase domain protein.
 
  
 0.609
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.