STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2492PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: stp:Strop_2347 phage integrase family protein; Belongs to the 'phage' integrase family. (332 aa)    
Predicted Functional Partners:
Sare_1351
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: stp:Strop_1393 cell divisionFtsK/SpoIIIE.
  
   
 0.643
Sare_2493
KEGG: stp:Strop_2348 hypothetical protein.
       0.568
Sare_1916
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: stp:Strop_1925 cobyrinic acid a,c-diamide synthase.
 
   
 0.510
Sare_5104
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: stp:Strop_4586 ParB-like partition protein; Belongs to the ParB family.
  
  
 0.492
Sare_3743
PFAM: integrase family protein; KEGG: fal:FRAAL5456 integrase (recombinase); Belongs to the 'phage' integrase family.
  
     0.469
Sare_3794
PFAM: integrase family protein; KEGG: fal:FRAAL5456 integrase (recombinase).
  
     0.469
Sare_4139
PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: stp:Strop_3757 prephenate dehydrogenase.
  
    0.463
Sare_0083
PFAM: phosphoribosyltransferase; KEGG: stp:Strop_0086 phosphoribosyltransferase.
  
    0.459
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.459
Sare_1912
PFAM: NUDIX hydrolase; KEGG: stp:Strop_1921 NUDIX hydrolase.
  
  
 0.453
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.