STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2499Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2354 regulatory protein, TetR. (204 aa)    
Predicted Functional Partners:
Sare_3188
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2967 regulatory protein, TetR.
  
     0.742
Sare_1825
PFAM: lipopolysaccharide biosynthesis protein; KEGG: stp:Strop_1834 lipopolysaccharide biosynthesis protein.
  
 
 
 0.574
Sare_2498
PFAM: GYD family protein; KEGG: stp:Strop_2353 hypothetical protein.
       0.517
Sare_4897
KEGG: stp:Strop_4422 hypothetical protein.
  
     0.492
Sare_3280
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3054 lantibiotic dehydratase domain protein.
  
     0.487
Sare_1397
KEGG: stp:Strop_1433 hypothetical protein.
  
     0.464
Sare_1141
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_1252 regulatory protein, TetR.
  
   
 0.459
Sare_3453
KEGG: stp:Strop_3227 multiple resistance and pH regulation protein F.
  
     0.452
Sare_3271
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3045 lantibiotic dehydratase domain protein.
  
     0.447
Sare_3272
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3046 lantibiotic dehydratase domain protein.
  
     0.435
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.