STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2500PFAM: peptidase M23B; protein of unknown function DUF346; KEGG: sco:SCO0033 secreted neuraminidase. (506 aa)    
Predicted Functional Partners:
Sare_4738
PFAM: peptidase M23B; KEGG: stp:Strop_4302 peptidase M23B.
  
   
 0.743
Sare_2501
KEGG: rha:RHA1_ro01003 hypothetical protein.
 
     0.561
Sare_3923
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: stp:Strop_3548 glycosyl transferase, family 51.
  
     0.446
Sare_0919
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.427
Sare_4796
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SMART: PASTA domain containing protein; KEGG: stp:Strop_4354 glycosyl transferase, family 51.
  
   
 0.425
Sare_3240
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: stp:Strop_3015 glycosyl transferase, family 51.
  
     0.412
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.