Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sare_2510 | Sare_2511 | Sare_2510 | Sare_2511 | Putative transcriptional regulator, PaaX family; KEGG: stp:Strop_2947 hypothetical protein. | PFAM: Integral membrane protein TerC; KEGG: stp:Strop_1153 integral membrane protein TerC. | 0.447 |
Sare_2511 | Sare_2510 | Sare_2511 | Sare_2510 | PFAM: Integral membrane protein TerC; KEGG: stp:Strop_1153 integral membrane protein TerC. | Putative transcriptional regulator, PaaX family; KEGG: stp:Strop_2947 hypothetical protein. | 0.447 |
Sare_2511 | nhaA3 | Sare_2511 | Sare_2512 | PFAM: Integral membrane protein TerC; KEGG: stp:Strop_1153 integral membrane protein TerC. | Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family. | 0.433 |
nhaA3 | Sare_2511 | Sare_2512 | Sare_2511 | Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family. | PFAM: Integral membrane protein TerC; KEGG: stp:Strop_1153 integral membrane protein TerC. | 0.433 |