STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2583PFAM: protein of unknown function DUF181; KEGG: stp:Strop_2428 protein of unknown function DUF181. (607 aa)    
Predicted Functional Partners:
Sare_2587
KEGG: stp:Strop_2432 hypothetical protein.
 
  
 0.933
Sare_2589
KEGG: stp:Strop_2434 hypothetical protein.
 
  
 0.932
Sare_2588
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_2433 lantibiotic dehydratase domain protein.
 
  
 0.914
Sare_2591
KEGG: stp:Strop_2436 hypothetical protein.
 
     0.897
Sare_2586
PFAM: peptidase M50; KEGG: stp:Strop_2431 peptidase M50.
 
    0.888
Sare_2584
PFAM: ABC-2 type transporter; KEGG: stp:Strop_2429 ABC-2 type transporter.
 
  
 0.854
Sare_2592
Transcriptional regulator, SARP family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: stp:Strop_2437 transcriptional activator domain.
 
     0.848
Sare_2585
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_2430 ABC transporter related.
 
    0.738
Sare_2590
PFAM: protein of unknown function DUF181; KEGG: stp:Strop_2435 protein of unknown function DUF181.
 
    
0.575
Sare_0183
PFAM: Abortive infection protein; KEGG: stp:Strop_0170 abortive infection protein.
 
  
 0.551
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.