STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2625KEGG: stp:Strop_2037 hypothetical protein. (215 aa)    
Predicted Functional Partners:
Sare_2624
KEGG: stp:Strop_2038 hypothetical protein.
 
    
0.820
Sare_2618
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_2035 ABC transporter related.
 
     0.780
Sare_2617
PFAM: ABC-3 protein; KEGG: stp:Strop_2036 ABC-3 protein.
 
     0.734
Sare_4897
KEGG: stp:Strop_4422 hypothetical protein.
  
     0.664
Sare_1720
PFAM: sulfotransferase; KEGG: stp:Strop_1735 sulfotransferase.
  
     0.642
Sare_2622
KEGG: stp:Strop_2031 hypothetical protein.
 
     0.577
Sare_2111
KEGG: stp:Strop_2359 GCN5-related N-acetyltransferase.
  
     0.569
Sare_0843
KEGG: stp:Strop_0900 hypothetical protein.
  
     0.557
Sare_0206
KEGG: stp:Strop_0188 hypothetical protein.
 
   
 0.532
Sare_2623
KEGG: stp:Strop_2030 hypothetical protein.
 
    
0.518
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.