STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2664PFAM: lipolytic protein G-D-S-L family; KEGG: stp:Strop_2481 lipolytic enzyme, G-D-S-L family. (423 aa)    
Predicted Functional Partners:
Sare_2663
PFAM: cytochrome P450; KEGG: stp:Strop_2480 cytochrome P450.
       0.542
Sare_2662
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: stp:Strop_2479 alpha/beta hydrolase fold-3 domain protein.
     
 0.512
Sare_2660
Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: stp:Strop_2477 aminotransferase, class I and II.
       0.490
Sare_2661
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: stp:Strop_2478 FMN-dependent alpha-hydroxy acid dehydrogenase.
       0.488
Sare_2666
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_2483 major facilitator superfamily MFS_1.
 
     0.486
Sare_2229
PFAM: polysaccharide deacetylase; KEGG: stp:Strop_4391 polysaccharide deacetylase.
 
   
 0.466
Sare_0261
KEGG: stp:Strop_0222 hypothetical protein.
 
     0.463
Sare_4050
PFAM: glycoside hydrolase family 16; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: stp:Strop_3674 carbohydrate binding family 6.
  
   
 0.455
Sare_0717
KEGG: stp:Strop_0775 hypothetical protein.
  
     0.432
Sare_4899
PFAM: Ricin B lectin; glycoside hydrolase family 12; KEGG: stp:Strop_4424 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
 
 0.424
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.