STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2676Hypothetical protein. (172 aa)    
Predicted Functional Partners:
Sare_2678
Hypothetical protein.
  
    0.801
Sare_2679
KEGG: stp:Strop_2495 hypothetical protein.
  
    0.795
Sare_2675
PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_2492 AMP-dependent synthetase and ligase.
  
    0.782
Sare_2677
PFAM: Beta-ketoacyl synthase; KEGG: stp:Strop_2494 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.780
Sare_2674
PFAM: Beta-ketoacyl synthase; KEGG: stp:Strop_2491 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.777
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
  
 0.628
Sare_2672
PFAM: Phytanoyl-CoA dioxygenase; KEGG: stp:Strop_2489 phytanoyl-CoA dioxygenase.
  
  
 0.621
Sare_2671
KEGG: stp:Strop_2488 hypothetical protein.
       0.612
Sare_2673
KEGG: stp:Strop_2490 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.605
Sare_2669
PFAM: Transketolase central region; Transketolase domain protein; KEGG: stp:Strop_2486 transketolase domain protein.
     
 0.592
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.