STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2741KEGG: stp:Strop_2552 periplasmic binding protein. (343 aa)    
Predicted Functional Partners:
Sare_2742
PFAM: transport system permease protein; KEGG: stp:Strop_2553 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.968
Sare_2744
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_2555 ABC transporter related.
 
 
 0.921
Sare_4500
PFAM: transport system permease protein; ABC-3 protein; KEGG: stp:Strop_4080 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.910
Sare_4499
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_4079 ABC transporter related.
  
 
 0.826
Sare_2743
PFAM: transport system permease protein; KEGG: stp:Strop_2554 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.789
Sare_2737
PFAM: IucA/IucC family protein; KEGG: stp:Strop_2548 IucA/IucC family protein.
     
 0.679
Sare_4645
KEGG: sen:SACE_3171 hypothetical protein.
  
     0.570
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.554
Sare_2740
PFAM: Pyridoxal-dependent decarboxylase; KEGG: stp:Strop_2551 pyridoxal-dependent decarboxylase.
       0.545
Sare_2746
KEGG: stp:Strop_2557 hypothetical protein.
     
 0.543
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.