STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2797KEGG: sen:SACE_4666 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Sare_2796
PFAM: transcriptional regulator PadR family protein; KEGG: stp:Strop_2598 transcriptional regulator PadR family protein.
 
     0.751
Sare_2798
PFAM: luciferase family protein; KEGG: stp:Strop_2599 luciferase family protein.
       0.655
Sare_4901
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_4426 helix-turn-helix domain protein.
  
     0.518
Sare_2735
PFAM: protein of unknown function DUF1486; KEGG: mav:MAV_2173 hypothetical protein.
 
     0.451
Sare_0563
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bbr:BB1606 putative oxidoreductase.
     
 0.403
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.