STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2800Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2601 regulatory protein, TetR. (224 aa)    
Predicted Functional Partners:
Sare_2799
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: stp:Strop_2600 alcohol dehydrogenase GroES domain protein.
     
 0.551
Sare_2839
PFAM: protein of unknown function DUF35; KEGG: stp:Strop_2642 protein of unknown function DUF35.
  
     0.535
Sare_2801
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_2602 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.505
Sare_2841
KEGG: stp:Strop_2644 propanoyl-CoA C-acyltransferase.
  
     0.475
Sare_2840
KEGG: stp:Strop_2643 hypothetical protein.
  
     0.469
Sare_2820
KEGG: stp:Strop_2622 hypothetical protein.
  
   
 0.457
Sare_2821
PFAM: protein of unknown function DUF35; KEGG: stp:Strop_2623 protein of unknown function DUF35.
  
     0.454
Sare_2805
PFAM: coenzyme A transferase; KEGG: stp:Strop_2606 coenzyme A transferase.
  
     0.440
Sare_2823
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2625 regulatory protein, TetR.
  
   
 0.440
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.