STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2810KEGG: stp:Strop_2611 cholesterol oxidase. (543 aa)    
Predicted Functional Partners:
Sare_4224
PFAM: FAD dependent oxidoreductase; KEGG: stp:Strop_3834 FAD dependent oxidoreductase.
  
  
 
0.926
Sare_2811
PFAM: cytochrome P450; KEGG: stp:Strop_2612 cytochrome P450.
     
  0.900
Sare_3526
PFAM: cytochrome c class I; KEGG: stp:Strop_3294 cytochrome c, class I.
   
 
 0.779
Sare_1583
KEGG: stp:Strop_1051 hypothetical protein.
    
 0.716
Sare_2788
TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: stp:Strop_2590 Dyp-type peroxidase family.
      
 0.480
Sare_4892
KEGG: stp:Strop_4418 hypothetical protein.
  
    0.447
Sare_3063
PFAM: Thioesterase; KEGG: stp:Strop_0674 thioesterase.
  
     0.437
Sare_3272
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3046 lantibiotic dehydratase domain protein.
 
     0.418
Sare_3274
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3048 lantibiotic dehydratase domain protein.
 
     0.403
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.