STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2819KEGG: stp:Strop_2621 hypothetical protein. (389 aa)    
Predicted Functional Partners:
Sare_2821
PFAM: protein of unknown function DUF35; KEGG: stp:Strop_2623 protein of unknown function DUF35.
 
 
 0.991
Sare_1468
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: stp:Strop_1526 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 0.973
Sare_2820
KEGG: stp:Strop_2622 hypothetical protein.
 
 
 0.961
Sare_2822
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_2624 acyl-CoA dehydrogenase domain protein.
 
 
 0.928
Sare_2839
PFAM: protein of unknown function DUF35; KEGG: stp:Strop_2642 protein of unknown function DUF35.
 
 
 0.896
Sare_2816
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_2617 acyl-CoA dehydrogenase domain protein.
 
 
 0.832
Sare_2886
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_2678 acyl-CoA dehydrogenase domain protein.
 
 
 0.821
Sare_2814
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_2615 acyl-CoA dehydrogenase domain protein.
 
 
 0.819
Sare_2808
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_2609 acyl-CoA dehydrogenase domain protein.
 
 
 0.818
Sare_2823
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2625 regulatory protein, TetR.
 
   
 0.815
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.