STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2829PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: stp:Strop_2632 pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (159 aa)    
Predicted Functional Partners:
Sare_3558
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: stp:Strop_3324 domain of unknown function DUF1731.
  
    0.687
Sare_2839
PFAM: protein of unknown function DUF35; KEGG: stp:Strop_2642 protein of unknown function DUF35.
  
     0.619
Sare_2828
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_2631 short-chain dehydrogenase/reductase SDR.
  
    0.599
Sare_0976
PFAM: TrkA-N domain protein; KEGG: stp:Strop_1088 hypothetical protein.
  
    0.525
Sare_2820
KEGG: stp:Strop_2622 hypothetical protein.
  
     0.525
Sare_2888
KEGG: stp:Strop_2680 hypothetical protein.
  
     0.516
arcA
Arginine deiminase; PFAM: amidinotransferase; KEGG: stp:Strop_4517 arginine deiminase.
   
    0.507
Sare_1261
PFAM: protein of unknown function DUF1271; KEGG: sco:SCO7676 ferredoxin.
   
    0.505
Sare_2647
TIGRFAM: pyridoxal kinase; KEGG: stp:Strop_2472 pyridoxal kinase; Belongs to the pyridoxine kinase family.
     
  0.499
Sare_2841
KEGG: stp:Strop_2644 propanoyl-CoA C-acyltransferase.
  
     0.475
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.