STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2833PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_2636 short-chain dehydrogenase/reductase SDR. (258 aa)    
Predicted Functional Partners:
Sare_2832
KEGG: stp:Strop_2635 hypothetical protein.
   0.969
Sare_2834
KEGG: stp:Strop_2637 hypothetical protein.
 
  
 0.948
Sare_2835
PFAM: 2-nitropropane dioxygenase NPD; KEGG: stp:Strop_2638 2-nitropropane dioxygenase, NPD.
 
  
 0.665
Sare_2953
KEGG: acr:Acry_2451 hypothetical protein.
   0.641
Sare_2836
PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_2639 AMP-dependent synthetase and ligase.
 
 
 
 0.624
Sare_0583
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dra:DR_1467 short chain dehydrogenase.
  
     0.621
Sare_2880
PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_2672 Rieske (2Fe-2S) domain protein.
 
   
 0.608
Sare_2205
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mms:mma_2399 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.566
Sare_0129
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: stp:Strop_0124 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.556
Sare_2820
KEGG: stp:Strop_2622 hypothetical protein.
  
 0.551
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.