STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2835PFAM: 2-nitropropane dioxygenase NPD; KEGG: stp:Strop_2638 2-nitropropane dioxygenase, NPD. (373 aa)    
Predicted Functional Partners:
Sare_2836
PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_2639 AMP-dependent synthetase and ligase.
 
    0.887
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.820
Sare_2839
PFAM: protein of unknown function DUF35; KEGG: stp:Strop_2642 protein of unknown function DUF35.
 
     0.701
Sare_2821
PFAM: protein of unknown function DUF35; KEGG: stp:Strop_2623 protein of unknown function DUF35.
 
     0.699
Sare_3151
Beta-ketoacyl synthase; PFAM: Thioesterase; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; Erythronolide synthase docking; KEGG: sen:SACE_4139 type I modular polyketide synthase.
  
 
 0.698
Sare_2837
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_2640 enoyl-CoA hydratase/isomerase.
 
  
 0.696
Sare_2407
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sde:Sde_3725 polyketide synthase modules and related proteins-like.
  
 
 0.695
Sare_2840
KEGG: stp:Strop_2643 hypothetical protein.
 
    0.692
Sare_2820
KEGG: stp:Strop_2622 hypothetical protein.
 
    0.683
Sare_2804
PFAM: coenzyme A transferase; KEGG: stp:Strop_2605 coenzyme A transferase.
 
  
 0.681
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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