STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2852KEGG: cjk:jk1253 restriction endonuclease S subunits. (412 aa)    
Predicted Functional Partners:
Sare_2853
PFAM: N-6 DNA methylase; KEGG: cjk:jk1254 type I restriction-modification system methyltransferase subunit.
 
 
 0.999
Sare_3084
PFAM: protein of unknown function DUF262; AAA-4 family protein; KEGG: gka:GK3283 hypothetical protein.
 
    0.909
Sare_3033
PFAM: protein of unknown function DUF262; AAA-4 family protein; KEGG: tma:TM0991 hypothetical protein.
  
    0.897
Sare_4979
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: cdi:DIP0119 hypothetical protein.
 
    0.665
atpF
ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
    
 
 0.656
Sare_1761
KEGG: stp:Strop_1774 hypothetical protein.
  
  
 0.474
Sare_1344
PFAM: protein of unknown function DUF1006; KEGG: stp:Strop_1386 protein of unknown function DUF1006.
  
    0.470
Sare_2148
PFAM: protein of unknown function DUF201; KEGG: plu:plu0116 hypothetical protein.
  
 
 
 0.411
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.