STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2876PFAM: flavin reductase domain protein FMN-binding; KEGG: stp:Strop_2668 flavin reductase domain protein, FMN-binding. (185 aa)    
Predicted Functional Partners:
Sare_2877
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_2669 biphenyl-2,3-diol 1,2-dioxygenase.
 
 
 0.986
Sare_2879
PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_2671 acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
  
 0.982
Sare_5016
PFAM: flavin reductase domain protein FMN-binding; KEGG: stp:Strop_4506 flavin reductase domain protein, FMN-binding.
  
  
  0.913
Sare_2878
PFAM: alpha/beta hydrolase fold; KEGG: stp:Strop_2670 alpha/beta hydrolase fold.
  
    0.800
Sare_2880
PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_2672 Rieske (2Fe-2S) domain protein.
 
   
 0.645
Sare_2882
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: stp:Strop_2674 ferredoxin.
  
  
 0.579
Sare_2881
KEGG: stp:Strop_2673 hypothetical protein.
       0.540
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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