STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2895PFAM: protein of unknown function DUF81; KEGG: rha:RHA1_ro08898 possible membrane protein. (277 aa)    
Predicted Functional Partners:
Sare_2892
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: stp:Strop_1960 beta-lactamase domain protein.
 
  
 0.878
Sare_2894
PFAM: Rhodanese domain protein; KEGG: mva:Mvan_4028 rhodanese domain protein.
 
  
 0.819
Sare_2893
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rha:RHA1_ro08900 probable transcriptional regulator, GntR family.
       0.776
Sare_2226
PFAM: protein of unknown function DUF156; KEGG: stp:Strop_2087 protein of unknown function DUF156.
 
   
 0.738
Sare_2224
PFAM: Rhodanese domain protein; KEGG: stp:Strop_2085 rhodanese domain protein.
 
  
 0.721
Sare_2225
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: stp:Strop_2086 beta-lactamase domain protein.
 
  
 0.695
Sare_2891
PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stp:Strop_1961 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
     0.571
pheT
KEGG: stp:Strop_1887 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
     
 0.504
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.