STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2896Alpha-amylase; KEGG: stp:Strop_2686 alpha amylase, catalytic region; PFAM: glycoside hydrolase starch-binding; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain. (722 aa)    
Predicted Functional Partners:
Sare_0745
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: stp:Strop_0801 alpha amylase, catalytic region.
 
  
 0.933
Sare_0277
PFAM: amino acid permease-associated region; KEGG: stp:Strop_0237 amino acid permease-associated region.
   
 0.765
Sare_1452
KEGG: stp:Strop_1487 hypothetical protein.
   
 0.765
Sare_1731
PFAM: amino acid permease-associated region; KEGG: stp:Strop_1747 amino acid permease-associated region.
   
 0.765
Sare_1963
PFAM: amino acid permease-associated region; KEGG: gka:GK2269 amino acid transporter.
   
 0.765
Sare_2158
PFAM: amino acid permease-associated region; KEGG: bvi:Bcep1808_4744 amino acid permease-associated region.
   
 0.765
Sare_2342
PFAM: amino acid permease-associated region; KEGG: stp:Strop_4375 amino acid permease-associated region.
   
 0.765
Sare_3392
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: stp:Strop_3167 ferredoxin-dependent glutamate synthase.
     
 0.551
Sare_3983
PFAM: glycoside hydrolase family 6; cellulose-binding family II; KEGG: stp:Strop_3602 glycoside hydrolase, family 6; Belongs to the glycosyl hydrolase family 6.
  
   
 0.486
Sare_0748
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_0804 binding-protein-dependent transport systems inner membrane component.
  
  
 0.463
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.