STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_2935Hypothetical protein. (403 aa)    
Predicted Functional Partners:
Sare_4466
TIGRFAM: LPXTG-motif cell wall anchor domain; KEGG: stp:Strop_1616 LPXTG-motif cell wall anchor domain.
   
   0.848
Sare_1642
KEGG: stp:Strop_1657 hypothetical protein.
  
     0.581
Sare_1643
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: stp:Strop_1658 adenylyl cyclase class-3/4/guanylyl cyclase.
  
     0.513
Sare_2936
Peroxidase; PFAM: Animal haem peroxidase; KEGG: rba:RB633 peroxidase.
       0.501
Sare_0951
KEGG: stp:Strop_3153 hypothetical protein.
  
     0.473
Sare_1221
PFAM: NUDIX hydrolase; KEGG: stp:Strop_0069 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
  
     0.472
Sare_3938
Hypothetical protein; KEGG: nfa:nfa28750 putative two-component system sensor kinase.
  
     0.467
Sare_4892
KEGG: stp:Strop_4418 hypothetical protein.
  
     0.465
Sare_2070
PFAM: Methyltransferase type 12; KEGG: stp:Strop_2656 methyltransferase type 12.
  
     0.453
Sare_2934
Hypothetical protein.
       0.426
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.