Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Sare_3003PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sus:Acid_2667 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. (419 aa)    
Predicted Functional Partners:
Sare_3007
KEGG: aba:Acid345_0655 hypothetical protein.
 
     0.905
Sare_0238
PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_0078 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.903
Sare_0771
PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_0827 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
     
 0.903
Sare_2802
PFAM: aldehyde dehydrogenase; KEGG: stp:Strop_2603 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.903
Sare_3005
PFAM: KDPG and KHG aldolase; KEGG: sco:SCO3495 putative 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase.
 
   
 0.873
Sare_3006
PFAM: PfkB domain protein; KEGG: psp:PSPPH_2667 2-dehydro-3-deoxygluconokinase.
 
   
 0.842
Sare_3002
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMa0059 hypothetical protein.
 
   
 0.821
Sare_3004
PFAM: Acetyl xylan esterase; KEGG: sma:SAV1302 putative cephalosporin C deacetylase.
 
     0.816
Sare_2997
KEGG: sma:SAV1843 hypothetical protein.
 
   
 0.769
Sare_2999
PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO0065 putative extracellular binding protein.
 
     0.728
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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