STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3012KEGG: stp:Strop_4146 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Sare_0487
PFAM: phosphopantetheine-binding; KEGG: ttj:TTHA0414 acyl carrier protein.
     
  0.900
Sare_1051
KEGG: stp:Strop_2495 hypothetical protein.
     
  0.900
Sare_2679
KEGG: stp:Strop_2495 hypothetical protein.
     
  0.900
Sare_3057
PFAM: phosphopantetheine-binding; KEGG: stp:Strop_0682 phosphopantetheine-binding.
     
  0.900
Sare_3062
KEGG: stp:Strop_0677 hypothetical protein.
     
  0.900
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
     
  0.900
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.852
Sare_3013
Male sterility domain; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: stp:Strop_4147 male sterility C-terminal domain.
  
  
 0.834
Sare_3014
SMART: nucleoside diphosphate kinase; KEGG: stp:Strop_4148 nucleoside diphosphate kinase; Belongs to the NDK family.
  
   0.828
Sare_3011
PFAM: DNA polymerase beta domain protein region; KEGG: stp:Strop_4145 DNA polymerase, beta domain protein region.
  
   0.823
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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