STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3102KEGG: stp:Strop_4199 hypothetical protein. (399 aa)    
Predicted Functional Partners:
Sare_3101
KEGG: stp:Strop_4198 hypothetical protein.
 
     0.950
Sare_3100
KEGG: mgi:Mflv_1133 hypothetical protein.
 
     0.948
Sare_4703
KEGG: stp:Strop_4198 hypothetical protein.
 
     0.789
Sare_4646
KEGG: stp:Strop_4198 hypothetical protein.
 
     0.786
Sare_0544
KEGG: mbb:BCG_3912 hypothetical protein.
  
     0.715
Sare_0179
KEGG: mav:MAV_4984 alpha/beta hydrolase fold-1.
  
     0.550
Sare_2033
PFAM: protein of unknown function DUF1205; KEGG: stm:STM2773 putative glycosyl transferase.
  
     0.507
Sare_0941
PFAM: protein of unknown function DUF690; Conotoxin TVIIAGS; KEGG: stp:Strop_1440 protein of unknown function DUF690.
  
     0.494
Sare_3099
Transcriptional regulator, SARP family; PFAM: transcriptional regulator domain protein; NB-ARC domain protein; transcriptional activator domain; KEGG: sco:SCO4426 regulatory protein.
       0.487
Sare_2470
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2892 regulatory protein, TetR.
  
     0.454
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (76%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.