STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3163Ferredoxin; KEGG: sco:SCO7676 ferredoxin. (71 aa)    
Predicted Functional Partners:
Sare_3162
PFAM: cytochrome P450; KEGG: sco:SCO0774 cytochrome P450.
 
  
 0.816
Sare_3242
KEGG: mjl:Mjls_3780 putative ferredoxin.
  
     0.742
Sare_2537
KEGG: stp:Strop_1338 protein of unknown function DUF1271.
  
     0.562
Sare_1261
PFAM: protein of unknown function DUF1271; KEGG: sco:SCO7676 ferredoxin.
  
     0.523
Sare_4828
KEGG: sen:SACE_5460 hypothetical protein.
  
     0.480
Sare_1225
PFAM: aminoglycoside phosphotransferase; KEGG: sen:SACE_0070 aminoglycoside phosphotransferase.
  
     0.450
Sare_4827
KEGG: fal:FRAAL2969 hypothetical protein.
  
     0.443
Sare_0091
KEGG: stp:Strop_0094 hypothetical protein.
  
     0.442
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.