STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3203KEGG: stp:Strop_2979 hypothetical protein. (197 aa)    
Predicted Functional Partners:
Sare_0200
PFAM: protein of unknown function DUF182; KEGG: sco:SCO6174 hypothetical protein.
 
  
 0.875
Sare_0203
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpd:RPD_0916 twin-arginine translocation pathway signal.
 
  
 0.805
Sare_0201
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rpd:RPD_0914 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
   
 0.791
Sare_0202
PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sus:Acid_3649 molybdopterin dehydrogenase, FAD-binding.
 
  
 0.764
Sare_1084
PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: stp:Strop_1191 glycoside hydrolase, family 38.
   
    0.495
Sare_3204
PFAM: DNA-directed DNA polymerase; KEGG: stp:Strop_2980 DNA-directed DNA polymerase.
       0.458
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.