Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sare_3209Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: stp:Strop_2984 sugar isomerase (SIS). (320 aa)    
Predicted Functional Partners:
Sare_3207
PFAM: extracellular solute-binding protein family 1; KEGG: stp:Strop_2983 extracellular solute-binding protein, family 1.
 
   
 0.841
Sare_3210
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sen:SACE_0495 ATPase, BadF/BadG/BcrA/BcrD type.
 
     0.810
Sare_3208
Hypothetical protein.
       0.793
Sare_3206
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_2982 binding-protein-dependent transport systems inner membrane component.
 
     0.723
Sare_3205
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_2981 binding-protein-dependent transport systems inner membrane component.
 
   
 0.703
Sare_1226
PFAM: regulatory protein GntR HTH; KEGG: xau:Xaut_1317 transcriptional regulator, GntR family.
  
   
 0.473
Sare_3204
PFAM: DNA-directed DNA polymerase; KEGG: stp:Strop_2980 DNA-directed DNA polymerase.
       0.466
Sare_0286
KEGG: stp:Strop_0245 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3.
 
   
 0.426
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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