STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3228Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; KEGG: fal:FRAAL4397 hypothetical protein; putative signal peptide. (817 aa)    
Predicted Functional Partners:
Sare_3227
PFAM: Roadblock/LC7 family protein; KEGG: tfu:Tfu_0941 conserved hypothetical protein.
 
     0.951
Sare_3226
PFAM: protein of unknown function DUF742; KEGG: sma:SAV2181 hypothetical protein.
 
     0.947
Sare_3225
PFAM: protein of unknown function ATP binding; KEGG: tfu:Tfu_0943 putative ATP/GTP-binding protein.
 
     0.946
Sare_1290
PFAM: Roadblock/LC7 family protein; KEGG: sen:SACE_1954 hypothetical protein.
 
     0.790
Sare_3979
PFAM: Roadblock/LC7 family protein; KEGG: stp:Strop_3598 roadblock/LC7 family protein.
 
     0.790
Sare_0761
PFAM: Roadblock/LC7 family protein; KEGG: stp:Strop_0817 roadblock/LC7 family protein.
 
     0.789
Sare_4265
PFAM: Roadblock/LC7 family protein; KEGG: stp:Strop_3874 roadblock/LC7 family protein.
 
     0.789
Sare_4263
PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: stp:Strop_3872 protein of unknown function, ATP binding.
 
     0.772
Sare_0700
PFAM: Roadblock/LC7 family protein; KEGG: stp:Strop_0758 roadblock/LC7 family protein.
  
     0.771
Sare_0762
PFAM: protein of unknown function DUF742; KEGG: stp:Strop_0818 protein of unknown function DUF742.
 
     0.771
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.