STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3245PFAM: protein of unknown function DUF107; KEGG: stp:Strop_3019 protein of unknown function DUF107. (156 aa)    
Predicted Functional Partners:
Sare_3244
PFAM: band 7 protein; KEGG: stp:Strop_3018 band 7 protein.
 
  
 0.984
Sare_5091
PFAM: band 7 protein; KEGG: sco:SCO3607 putative secreted protein.
  
  
 0.800
cobS
Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.790
Sare_2702
TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: stp:Strop_2520 precorrin-3B C17-methyltransferase.
  
    0.690
Sare_0233
PFAM: protein of unknown function DUF307; KEGG: stp:Strop_0205 protein of unknown function DUF307.
   
    0.659
Sare_3247
KEGG: stp:Strop_3021 hypothetical protein.
     
 0.648
Sare_2559
PFAM: band 7 protein; KEGG: stp:Strop_2410 band 7 protein.
 
  
 0.624
Sare_3246
KEGG: stp:Strop_3020 hypothetical protein.
       0.573
Sare_3243
KEGG: stp:Strop_3017 hypothetical protein.
       0.491
Sare_3837
KEGG: stp:Strop_3457 hypothetical protein.
   
  
 0.484
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.