STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3248TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_3022 HAD-superfamily hydrolase, subfamily IIA; Belongs to the HAD-like hydrolase superfamily. (259 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.812
Sare_1168
PFAM: Dak phosphatase; KEGG: stp:Strop_1278 Dak phosphatase.
      
 0.615
Sare_3250
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_3024 short-chain dehydrogenase/reductase SDR.
       0.515
Sare_3251
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_3025 3-oxoacyl-(acyl-carrier-protein) reductase.
   
 
 0.456
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
     
 0.428
Sare_4172
PFAM: adenylylsulfate kinase; KEGG: stp:Strop_3792 adenylylsulfate kinase.
  
   0.419
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.