STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3267Tetratricopeptide TPR_4; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_3041 tetratricopeptide TPR_4. (890 aa)    
Predicted Functional Partners:
Sare_3265
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: stp:Strop_3039 sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.896
Sare_3264
KEGG: stp:Strop_3038 hypothetical protein.
 
     0.887
Sare_3266
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: stp:Strop_3040 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
     0.847
Sare_3271
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3045 lantibiotic dehydratase domain protein.
 
     0.611
Sare_3272
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3046 lantibiotic dehydratase domain protein.
 
     0.585
Sare_3274
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3048 lantibiotic dehydratase domain protein.
 
     0.578
Sare_1645
SMART: LamG domain protein jellyroll fold domain protein; KEGG: stp:Strop_1053 LamG domain protein jellyroll fold domain protein.
  
     0.554
Sare_1349
KEGG: stp:Strop_1391 hypothetical protein.
 
     0.539
Sare_1102
KEGG: stp:Strop_1209 hypothetical protein.
  
     0.535
Sare_4067
KEGG: stp:Strop_3687 hypothetical protein.
  
     0.499
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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