STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3290KEGG: stp:Strop_3063 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Sare_1742
KEGG: stp:Strop_1756 hypothetical protein.
  
     0.598
Sare_1747
KEGG: stp:Strop_1761 hypothetical protein.
  
     0.460
Sare_2527
KEGG: stp:Strop_2389 hypothetical protein.
  
     0.458
Sare_3289
TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: stp:Strop_3062 aconitate hydratase 1.
       0.457
Sare_3975
PFAM: von Willebrand factor type A; KEGG: stp:Strop_3594 von Willebrand factor, type A.
  
     0.444
Sare_2141
KEGG: rha:RHA1_ro00624 hypothetical protein.
  
     0.438
Sare_0780
KEGG: stp:Strop_0835 hypothetical protein.
 
     0.427
Sare_1752
PFAM: glycosyl transferase family 9; KEGG: stp:Strop_1766 glycosyl transferase, family 9.
  
     0.423
Sare_1746
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: glycosyl transferase family 9; Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_1760 hydrolase, HAD-superfamily, subfamily IIIA.
  
     0.418
Sare_2107
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_2049 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.401
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.