STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3304PFAM: protein of unknown function DUF59; KEGG: stp:Strop_3077 protein of unknown function DUF59. (140 aa)    
Predicted Functional Partners:
Sare_3305
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: stp:Strop_3078 SUF system FeS assembly protein, NifU family.
 
    0.993
Sare_3307
KEGG: stp:Strop_3080 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.972
Sare_3310
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: stp:Strop_3083 FeS assembly protein SufB.
 
   
 0.958
Sare_3309
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: stp:Strop_3082 FeS assembly protein SufD.
 
   
 0.948
Sare_3306
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: stp:Strop_3079 cysteine desulfurase, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.898
Sare_3311
Putative transcriptional regulator; PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: stp:Strop_3084 regulatory protein, ArsR.
       0.830
Sare_3308
PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_3081 Rieske (2Fe-2S) domain protein.
 
     0.773
Sare_4471
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: stp:Strop_4072 phenylacetate-CoA oxygenase, PaaH subunit.
  
  
 0.618
Sare_2122
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.566
Sare_2187
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ade:Adeh_0846 cysteine desulfurase, SufS subfamily.
 
  
 0.550
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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