STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3357PFAM: Lytic transglycosylase catalytic; KEGG: stp:Strop_3130 lytic transglycosylase, catalytic. (161 aa)    
Predicted Functional Partners:
Sare_1720
PFAM: sulfotransferase; KEGG: stp:Strop_1735 sulfotransferase.
  
   
 0.649
Sare_3541
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: stp:Strop_3309 tetratricopeptide TPR_2 repeat protein.
 
     0.628
Sare_2111
KEGG: stp:Strop_2359 GCN5-related N-acetyltransferase.
  
     0.589
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
       0.584
Sare_1635
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: stp:Strop_1650 regulatory protein, LuxR.
  
   
 0.555
Sare_3426
KEGG: stp:Strop_3200 hypothetical protein.
  
   
 0.536
Sare_3358
Hypothetical protein.
       0.530
Sare_4741
PFAM: cell divisionFtsK/SpoIIIE; KEGG: stp:Strop_4305 cell divisionFtsK/SpoIIIE.
 
   
 0.527
Sare_4897
KEGG: stp:Strop_4422 hypothetical protein.
  
     0.515
Sare_0434
PFAM: Tetratricopeptide TPR_4; KEGG: stp:Strop_0364 adenylate cyclase family 3-like protein.
  
     0.500
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.