STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3406PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3180 ABC transporter related. (593 aa)    
Predicted Functional Partners:
Sare_3407
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3181 ABC transporter related.
 
    
0.901
Sare_4180
KEGG: stp:Strop_3800 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
     
0.835
Sare_4209
KEGG: stp:Strop_3819 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
     
0.824
Sare_1395
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_1431 ABC transporter related.
 
     
0.758
Sare_3405
KEGG: kra:Krad_1109 hypothetical protein.
  
    0.605
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
 0.565
Sare_2407
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sde:Sde_3725 polyketide synthase modules and related proteins-like.
  
 0.518
Sare_3408
KEGG: stp:Strop_3182 hypothetical protein.
       0.473
Sare_2630
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: stp:Strop_2005 ABC transporter related; Belongs to the ABC transporter superfamily.
 
     
0.455
Sare_0736
PFAM: inositol monophosphatase; KEGG: stp:Strop_0792 inositol monophosphatase.
  
 
   0.451
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (78%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.