STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3464PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: stp:Strop_3238 methyltransferase type 11. (249 aa)    
Predicted Functional Partners:
Sare_3463
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: stp:Strop_3237 type I phosphodiesterase/nucleotide pyrophosphatase.
       0.923
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
     
 0.706
Sare_3465
Hypothetical protein.
       0.605
Sare_4071
KEGG: stp:Strop_3691 hypothetical protein.
  
     0.555
Sare_3469
KEGG: stp:Strop_3242 hypothetical protein.
 
     0.546
Sare_0399
KEGG: stp:Strop_0332 hypothetical protein.
  
     0.522
dnaE2
DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
       0.520
Sare_3461
KEGG: stp:Strop_3235 hypothetical protein.
       0.514
Sare_3467
PFAM: UMUC domain protein DNA-repair protein; KEGG: stp:Strop_3240 hypothetical protein.
     
 0.454
Sare_3445
KEGG: stp:Strop_3219 hypothetical protein.
 
     0.449
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.