STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3485Chitinase; KEGG: stp:Strop_3258 glycoside hydrolase, family 18; PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family. (539 aa)    
Predicted Functional Partners:
Sare_3186
PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; KEGG: stp:Strop_2965 cellulose-binding, family II; Belongs to the glycosyl hydrolase 18 family.
 
 
0.960
Sare_3807
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: stp:Strop_3430 beta-N-acetylhexosaminidase.
 
  
 0.957
Sare_1755
PFAM: glycoside hydrolase family 3 domain protein; KEGG: stp:Strop_1768 glycoside hydrolase, family 3 domain protein.
   
 
 0.905
Sare_3626
PFAM: glycoside hydrolase family 3 domain protein; KEGG: stp:Strop_3384 glycoside hydrolase, family 3 domain protein.
   
 
 0.905
Sare_1669
KEGG: kra:Krad_3740 secreted protein.
 
 
 
 0.870
Sare_1483
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_1647 chitin-binding, domain 3 protein.
   
 0.820
Sare_4858
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_2456 chitin-binding, domain 3 protein.
   
 0.782
Sare_1632
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_1647 chitin-binding, domain 3 protein.
   
 0.773
Sare_3527
PFAM: cytochrome c oxidase subunit III; KEGG: stp:Strop_3295 cytochrome c oxidase, subunit III.
    
 
 0.762
Sare_3532
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 
 0.762
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.