STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3486KEGG: pac:PPA1477 putative glycine betaine/proline ABC transporter; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase. (443 aa)    
Predicted Functional Partners:
Sare_3487
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_2224 glycine betaine transport system permease protein.
 0.999
Sare_1627
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_1642 binding-protein-dependent transport systems inner membrane component.
 0.996
Sare_3488
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sen:SACE_2223 glycine betaine transport system permease protein.
 
 0.996
Sare_3644
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bte:BTH_II1159 ABC transporter, periplasmic substrate-binding protein, putative.
 
 0.993
Sare_1628
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: stp:Strop_1643 substrate-binding region of ABC-type glycine betaine transport system.
 
 0.984
Sare_3224
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: stp:Strop_1643 substrate-binding region of ABC-type glycine betaine transport system.
 
 0.979
Sare_1626
KEGG: stp:Strop_1641 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 
0.907
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.