STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3520PFAM: NUDIX hydrolase; KEGG: stp:Strop_3288 NUDIX hydrolase. (180 aa)    
Predicted Functional Partners:
Sare_3522
PFAM: regulatory protein AsnC/Lrp family; KEGG: stp:Strop_3290 regulatory protein, AsnC/Lrp family.
       0.920
Sare_3521
PFAM: Nucleotidyl transferase; KEGG: stp:Strop_3289 nucleotidyl transferase.
 
     0.834
Sare_3519
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.771
Sare_0431
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_0361 GCN5-related N-acetyltransferase.
  
     0.700
Sare_4734
KEGG: stp:Strop_4298 hypothetical protein.
  
     0.688
Sare_4736
KEGG: stp:Strop_4300 hypothetical protein.
  
    0.679
Sare_3914
KEGG: stp:Strop_3539 hypothetical protein.
  
     0.660
Sare_5003
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: stp:Strop_4489 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.657
Sare_4438
KEGG: stp:Strop_4045 hypothetical protein.
  
     0.651
Sare_4787
Adenylate/guanylate cyclase with TPR repeats; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_4346 adenylyl cyclase class-3/4/guanylyl cyclase.
  
     0.649
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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