STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3523KEGG: stp:Strop_3291 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Sare_3524
PFAM: Cytochrome b/b6 domain; KEGG: stp:Strop_3292 cytochrome b/b6, N-terminal domain.
       0.492
Sare_3525
PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_3293 Rieske (2Fe-2S) domain protein.
       0.492
Sare_0400
KEGG: stp:Strop_0333 hypothetical protein.
 
     0.462
Sare_1077
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_1184 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.461
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.