STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3544KEGG: stp:Strop_3312 hypothetical protein. (66 aa)    
Predicted Functional Partners:
Sare_3543
PFAM: peptidase M50; KEGG: stp:Strop_3311 peptidase M50.
       0.897
Sare_4412
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: stp:Strop_4031 hypothetical protein.
  
     0.707
Sare_3545
Cobalbumin biosynthesis protein; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; cobalbumin biosynthesis protein; KEGG: stp:Strop_3313 cobalbumin biosynthesis protein.
       0.695
Sare_0229
KEGG: stp:Strop_0201 hypothetical protein.
  
     0.654
cobS
Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
       0.627
Sare_1180
KEGG: stp:Strop_1290 hypothetical protein.
  
     0.604
Sare_3505
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ace:Acel_0980 endonuclease/exonuclease/phosphatase.
  
     0.593
Sare_5025
Putative signal transduction histidine kinase; KEGG: stp:Strop_4515 hypothetical protein.
  
     0.591
Sare_2969
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_1517 protein of unknown function DUF397.
  
     0.459
Sare_1560
PFAM: sporulation and cell division protein SsgA; KEGG: stp:Strop_1600 sporulation and cell division protein SsgA.
  
     0.448
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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