STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3554PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: stp:Strop_3321 protein of unknown function DUF893, YccS/YhfK. (728 aa)    
Predicted Functional Partners:
Sare_3305
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: stp:Strop_3078 SUF system FeS assembly protein, NifU family.
   
    0.790
Sare_3280
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3054 lantibiotic dehydratase domain protein.
  
     0.761
Sare_3271
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3045 lantibiotic dehydratase domain protein.
  
     0.754
Sare_0475
PFAM: protein of unknown function DUF1275; KEGG: stp:Strop_0407 protein of unknown function DUF1275.
  
     0.753
Sare_3272
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3046 lantibiotic dehydratase domain protein.
  
     0.752
Sare_1397
KEGG: stp:Strop_1433 hypothetical protein.
  
     0.745
Sare_4605
KEGG: stp:Strop_0491 hypothetical protein.
  
     0.741
Sare_3274
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3048 lantibiotic dehydratase domain protein.
  
     0.736
Sare_1825
PFAM: lipopolysaccharide biosynthesis protein; KEGG: stp:Strop_1834 lipopolysaccharide biosynthesis protein.
 
     0.733
Sare_2554
KEGG: stp:Strop_2405 hypothetical protein.
  
     0.732
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.