STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3557PFAM: aldo/keto reductase; KEGG: stp:Strop_3323 aldo/keto reductase. (335 aa)    
Predicted Functional Partners:
Sare_3558
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: stp:Strop_3324 domain of unknown function DUF1731.
  
    0.652
Sare_2683
PFAM: Beta-ketoacyl synthase; KEGG: stp:Strop_2499 beta-ketoacyl-acyl-carrier-protein synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
  0.499
Sare_3556
KEGG: stp:Strop_1584 hypothetical protein.
       0.490
Sare_3559
KEGG: stp:Strop_3325 hypothetical protein.
       0.400
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.