STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3716PFAM: portal protein; KEGG: lxx:Lxx24040 phage-related portal protein. (404 aa)    
Predicted Functional Partners:
Sare_3715
TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: lxx:Lxx24050 phage-related head maturation protease.
 
   
 0.949
Sare_3766
TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: lxx:Lxx24050 phage-related head maturation protease.
 
   
 0.785
Sare_3718
KEGG: lxx:Lxx24020 phage-related terminase.
 
   
 0.782
Sare_3717
Hypothetical protein.
       0.773
Sare_3719
Hypothetical protein.
       0.605
Sare_3714
KEGG: lxx:Lxx24060 phage-related major capsid protein.
       0.545
Sare_3720
Hypothetical protein.
  
  
 0.526
Sare_3712
Hypothetical protein.
       0.507
Sare_3711
Hypothetical protein.
       0.503
Sare_3713
Hypothetical protein.
       0.491
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.