STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3793KEGG: stp:Strop_0866 helix-turn-helix domain protein. (111 aa)    
Predicted Functional Partners:
Sare_3794
PFAM: integrase family protein; KEGG: fal:FRAAL5456 integrase (recombinase).
       0.773
Sare_0394
PFAM: protein of unknown function DUF1503; KEGG: stp:Strop_0327 protein of unknown function DUF1503.
   
 
 0.758
Sare_3791
Prophage antirepressor; PFAM: BRO domain protein; KEGG: stp:Strop_4013 BRO domain protein domain protein.
  
    0.490
Sare_3790
Hypothetical protein.
       0.408
Sare_3792
Hypothetical protein.
       0.408
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.