STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3801KEGG: stp:Strop_3424 hypothetical protein. (178 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
     
 0.884
Sare_3915
KEGG: stp:Strop_3540 hypothetical protein.
  
     0.723
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
  
 0.708
Sare_3600
PFAM: Bifunctional DNA primase/polymerase; KEGG: stp:Strop_3360 hypothetical protein.
  
     0.700
Sare_0651
KEGG: stp:Strop_0704 hypothetical protein.
  
     0.679
Sare_4994
KEGG: stp:Strop_4480 hypothetical protein.
  
     0.677
Sare_1342
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_1384 GCN5-related N-acetyltransferase.
  
     0.652
Sare_2786
KEGG: stp:Strop_2588 hypothetical protein.
  
     0.638
Sare_3472
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_3245 GCN5-related N-acetyltransferase.
  
     0.629
Sare_4076
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: stp:Strop_3696 peptidase S24, S26A and S26B.
  
 
   0.623
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.