STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3914KEGG: stp:Strop_3539 hypothetical protein. (194 aa)    
Predicted Functional Partners:
Sare_3915
KEGG: stp:Strop_3540 hypothetical protein.
 
     0.855
Sare_4736
KEGG: stp:Strop_4300 hypothetical protein.
  
     0.769
Sare_3111
PFAM: Fibronectin type III domain protein; KEGG: stp:Strop_2911 fibronectin, type III domain protein.
  
     0.758
Sare_0764
KEGG: stp:Strop_0820 hypothetical protein.
  
     0.755
Sare_3633
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: stp:Strop_3391 anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
     0.754
Sare_4273
KEGG: stp:Strop_3882 hypothetical protein.
  
     0.739
Sare_0453
KEGG: stp:Strop_0382 hypothetical protein.
  
     0.736
Sare_1350
KEGG: stp:Strop_1392 hypothetical protein.
  
     0.726
Sare_0431
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_0361 GCN5-related N-acetyltransferase.
  
     0.722
Sare_4734
KEGG: stp:Strop_4298 hypothetical protein.
  
     0.722
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.